Topzle Topzle

Influenza A virus

Updated: Wikipedia source

Influenza A virus

Influenza A virus, or IAV is a pathogen with strains that cause seasonal flu in humans; it can also infect birds and some mammals. Strains of IAV circulate constantly in bats, pigs, horses, and dogs, while other mammals may be infected occasionally. It has also been the cause of a number of pandemics, most notably the Spanish Flu pandemic from 1918–1920. Subtypes of IAV are defined by the combination of the molecules on the surface of the virus which provoke an immune response; for example, "H1N1" denotes a subtype that has a type-1 hemagglutinin (H) protein and a type-1 neuraminidase (N) protein. Variations within subtypes affect how easily the virus spreads, the severity of illness, and its ability to infect different hosts. The virus changes through mutation and genetic reassortment, allowing it to evade immunity and sometimes jump between species. Symptoms of human seasonal flu usually include fever, cough, sore throat, muscle aches and, in severe cases, breathing problems and pneumonia that may be fatal. Humans can rarely become infected with strains of avian or swine influenza, usually as a result of close contact with infected animals; symptoms range from mild to severe including death. Bird-adapted strains of the virus can be asymptomatic in some aquatic birds but lethal if they spread to other species, such as chickens. IAV disease in poultry can be prevented by vaccination; however, biosecurity control measures such as quarantine, segregation, and good hygiene are preferred. In humans, seasonal influenza can be prevented by vaccination, or treated in its early stages with antiviral medicines. The Global Influenza Surveillance and Response System (GISRS) monitors the spread of influenza worldwide and informs development of both seasonal and pandemic vaccines. Several millions of specimens are tested by the GISRS network annually through a network of laboratories in 127 countries. As well as human viruses, GISRS monitors avian, swine, and other influenza viruses which could potentially infect humans. IAV vaccines need to be reformulated regularly in order to keep up with changes in the virus.

Tables

· Virology › Structure and genetics › Genome
1- PB2
1- PB2
RNA segment
1- PB2
Length
2341
Protein
PB2 (Polymerase Basic 2)
Function
A component of the viral RNA polymerase. PB2 also inhibits JAK1/STAT signaling to inhibit host innate immune response
2- PB1
2- PB1
RNA segment
2- PB1
Length
2341
Protein
PB1 (Polymerase Basic 1)
Function
A component of the viral RNA polymerase. It also degrades the host cell's mitochondrial antiviral signaling protein
PB1-F2 (Polymerase Basic 1-Frame 2)
PB1-F2 (Polymerase Basic 1-Frame 2)
RNA segment
PB1-F2 (Polymerase Basic 1-Frame 2)
Length
An accessory protein of most IAVs. Not needed for virus replication and growth, it interferes with the host immune response.
3- PA
3- PA
RNA segment
3- PA
Length
2233
Protein
PA (Polymerase Acid)
Function
A component of the viral RNA polymerase
4- HA
4- HA
RNA segment
4- HA
Length
1775
Protein
HA (Hemagglutinin)
Function
Part of the viral envelope, a protein that binds the virion to host cells, enabling the virus's RNA genetic material to invade it
5- NP
5- NP
RNA segment
5- NP
Length
1565
Protein
NP (Nucleoprotein)
Function
The nucleoprotein associates with the viral RNA to form a ribonucleoprotein (RNP). At the early stage of infection, the RNP binds to the host cell's importin-α which transports it into the host cell nucleus, where the viral RNA is transcribed and replicated. At a later stage of infection, newly manufactured viral RNA segments assemble with the NP protein and polymerase (PB1, PB2 and PA) to form the core of a progeny virion
6- NA
6- NA
RNA segment
6- NA
Length
1409
Protein
NA (Neuraminidase)
Function
Part of the viral envelope. NA enables the newly assembled virions to escape the host cell and go on to propagate the infection. NA also facilitates the movement of infective virus particles through mucus, enabling them to reach host epithelial cells.
7- M
7- M
RNA segment
7- M
Length
1027
Protein
M1 (Matrix Protein 1)
Function
Forms the capsid, which coats the viral nucleoproteins and supports the structure of the viral envelope. M1 also assists with the function of the NEP protein.
M2 (Matrix Protein 2)
M2 (Matrix Protein 2)
RNA segment
M2 (Matrix Protein 2)
Length
Forms a proton channel in the viral envelope, which is activated once a virion has bound to a host cell. This uncoats the virus, exposing its infective contents to the cytoplasm of the host cell
8- NS
8- NS
RNA segment
8- NS
Length
890
Protein
NS1 (non-structural protein 1)
Function
Counteracts the host's natural immune response and inhibits interferon production.
NEP (Nuclear Export Protein, formerly NS2 non-structural protein 2)
NEP (Nuclear Export Protein, formerly NS2 non-structural protein 2)
RNA segment
NEP (Nuclear Export Protein, formerly NS2 non-structural protein 2)
Length
Cooperates with the M1 protein to mediate the export of viral RNA copies from nucleus into cytoplasm in the late stage of viral replication
RNA segment
Length
Protein
Function
1- PB2
2341
PB2 (Polymerase Basic 2)
A component of the viral RNA polymerase. PB2 also inhibits JAK1/STAT signaling to inhibit host innate immune response
2- PB1
2341
PB1 (Polymerase Basic 1)
A component of the viral RNA polymerase. It also degrades the host cell's mitochondrial antiviral signaling protein
PB1-F2 (Polymerase Basic 1-Frame 2)
An accessory protein of most IAVs. Not needed for virus replication and growth, it interferes with the host immune response.
3- PA
2233
PA (Polymerase Acid)
A component of the viral RNA polymerase
PA-X
Arises from a ribosomal frameshift in the PA segment. Inhibits innate host immune responses, such as cytokine and interferon production.
4- HA
1775
HA (Hemagglutinin)
Part of the viral envelope, a protein that binds the virion to host cells, enabling the virus's RNA genetic material to invade it
5- NP
1565
NP (Nucleoprotein)
The nucleoprotein associates with the viral RNA to form a ribonucleoprotein (RNP). At the early stage of infection, the RNP binds to the host cell's importin-α which transports it into the host cell nucleus, where the viral RNA is transcribed and replicated. At a later stage of infection, newly manufactured viral RNA segments assemble with the NP protein and polymerase (PB1, PB2 and PA) to form the core of a progeny virion
6- NA
1409
NA (Neuraminidase)
Part of the viral envelope. NA enables the newly assembled virions to escape the host cell and go on to propagate the infection. NA also facilitates the movement of infective virus particles through mucus, enabling them to reach host epithelial cells.
7- M
1027
M1 (Matrix Protein 1)
Forms the capsid, which coats the viral nucleoproteins and supports the structure of the viral envelope. M1 also assists with the function of the NEP protein.
M2 (Matrix Protein 2)
Forms a proton channel in the viral envelope, which is activated once a virion has bound to a host cell. This uncoats the virus, exposing its infective contents to the cytoplasm of the host cell
8- NS
890
NS1 (non-structural protein 1)
Counteracts the host's natural immune response and inhibits interferon production.
NEP (Nuclear Export Protein, formerly NS2 non-structural protein 2)
Cooperates with the M1 protein to mediate the export of viral RNA copies from nucleus into cytoplasm in the late stage of viral replication

References

  1. World Health Organization
    https://www.who.int/news-room/fact-sheets/detail/influenza-(seasonal)
  2. Animal Influenza Virus
    https://pubmed.ncbi.nlm.nih.gov/32170708/
  3. "Influenza A Subtypes and the Species Affected"
    https://web.archive.org/web/20230317160745/https://www.cdc.gov/flu/other/animal-flu.html
  4. The Threat of Pandemic Influenza: Are We Ready? Workshop Summary
    https://www.ncbi.nlm.nih.gov/books/NBK22148/
  5. "Influenza Type A Viruses"
    https://www.cdc.gov/bird-flu/about/
  6. "Types of Influenza Viruses"
    https://www.cdc.gov/flu/about/viruses-types.html
  7. "Avian Influenza Type A Viruses"
    https://www.cdc.gov/bird-flu/about/index.html
  8. International Journal of Molecular Sciences
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5578040
  9. Nature Reviews. Microbiology
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5619696
  10. National Health Service
    https://www.nhs.uk/conditions/flu/
  11. GOV.UK
    https://www.gov.uk/government/collections/avian-influenza-guidance-data-and-analysis
  12. "Swine influenza in humans"
    https://www.ecdc.europa.eu/en/swine-influenza-humans
  13. Influenza and Other Respiratory Viruses
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5155642
  14. "Avian influenza (bird flu)"
    https://www.ema.europa.eu/en/human-regulatory-overview/public-health-threats/avian-influenza-bird-flu
  15. "Avian influenza (bird flu) vaccination"
    https://www.gov.uk/government/publications/avian-influenza-bird-flu-vaccination/avian-influenza-bird-flu-vaccination
  16. U.S. Centers for Disease Control and Prevention (CDC)
    https://web.archive.org/web/20240605225534/https://www.cdc.gov/flu/treatment/whatyoushould.htm
  17. Historical Dictionary of the World Health Organization
    https://books.google.com/books?id=9zCEmpopjG0C&dq=%22WHO%22+%22GISRS+is+a%22&pg=PA163
  18. "70 years of GISRS – the Global Influenza Surveillance & Response System"
    https://www.who.int/news-room/feature-stories/detail/seventy-years-of-gisrs---the-global-influenza-surveillance---response-system
  19. ICTV
    https://ictv.global/taxonomy
  20. "Taxonomy"
    https://ictv.global/taxonomy
  21. Bulletin of the World Health Organization
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2427714
  22. Bulletin of the World Health Organization
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2395936
  23. Journal of Clinical Microbiology
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3264186
  24. "Influenza Type A Viruses and Subtypes"
    https://www.cdc.gov/flu/avianflu/influenza-a-virus-subtypes.htm
  25. PLOS Pathogens
    https://doi.org/10.1371%2Fjournal.ppat.1003657
  26. Nature Reviews. Microbiology
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5619696
  27. science.vla.gov.uk
    https://science.vla.gov.uk/fluglobalnet/about_ai.html
  28. U.S. Centers for Disease Control and Prevention (CDC)
    https://www.cdc.gov/flu/other/animal-flu.html
  29. U.S. Centers for Disease Control and Prevention (CDC)
    https://web.archive.org/web/20240327035015/https://www.cdc.gov/flu/about/professionals/genetic-characterization.htm
  30. Pan American Health Organization
    https://www.paho.org/en/documents/technical-note-influenza-virus-nomenclature
  31. The Journal of General Virology
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5935222
  32. Vaccine
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3074182
  33. News-Medical
    https://www.news-medical.net/life-sciences/Influenza-A-Structure.aspx
  34. World Health Organization
    https://www.who.int/europe/news-room/fact-sheets/item/virology-of-human-influenza
  35. Nature Reviews. Disease Primers
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7097467
  36. Nucleic Acids Research
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9458418
  37. Frontiers in Immunology
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6062596
  38. Frontiers in Immunology
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10751371
  39. Current Opinion in Virology
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7185569
  40. Viruses
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7158166
  41. The Threat of Pandemic Influenza: Are We Ready? Workshop Summary. Institute of Medicine (US) Forum on Microbial Threats
    https://www.ncbi.nlm.nih.gov/books/NBK22148/
  42. Preprint
    https://www.biorxiv.org/content/10.1101/2023.02.15.528772v1.full
  43. Molecular Biology and Evolution
    https://doi.org/10.1093%2Foxfordjournals.molbev.a004105
  44. www.flu.com
    https://www.flu.com/Articles/2022/The-History-of-Influenza
  45. Nihon Rinsho. Japanese Journal of Clinical Medicine
    https://pubmed.ncbi.nlm.nih.gov/9360364
  46. U.S. Centers for Disease Control and Prevention (CDC)
    https://archive.cdc.gov/#/details?url=https://www.cdc.gov/flu/pandemic-resources/1918-pandemic-h1n1.html
  47. CU.S. Centers for Disease Control and Prevention (CDC)
    https://archive.cdc.gov/#/details?url=https://www.cdc.gov/flu/pandemic-resources/2009-h1n1-pandemic.html
  48. Gavi, the Vaccine Alliance
    https://www.gavi.org/vaccineswork/next-pandemic/h5n1-and-h7n9-influenza
  49. World Health Organization
    https://www.who.int/news-room/fact-sheets/detail/influenza-(avian-and-other-zoonotic)
  50. Journal of Virology
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2937809
  51. Journal of Virology
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1316012
  52. Emerging Infectious Diseases
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3366754
  53. U.S. Centers for Disease Control and Prevention (CDC)
    https://www.cdc.gov/flu/avianflu/virus-transmission.htm
  54. Public Health Reports
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2862331
  55. Microbiological Reviews
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC372859
  56. European Centre for Disease Control
    https://www.ecdc.europa.eu/en/swine-influenza/factsheet
  57. CDC U.S. influenza season summary with weekly updates See section 'Pneumonia and Influenza (P&I) Mortality Surveillance'
    https://www.cdc.gov/flu/weekly/
  58. PLOS ONE
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4847850
  59. Science in the News, a Graduate Student Group at the Harvard Graduate School of the Arts and Sciences
    https://sitn.hms.harvard.edu/flash/2014/the-reason-for-the-season-why-flu-strikes-in-winter/
  60. CNN
    https://www.cnn.com/2022/12/06/health/why-winter-colds-flu-wellness/index.html
  61. Merriam-Webster.com Dictionary
    https://www.merriam-webster.com/dictionary/zoonosis
  62. World Health Organization
    https://www.who.int/news-room/fact-sheets/detail/zoonoses
  63. www.ecdc.europa.eu
    https://www.ecdc.europa.eu/en/publications-data/zoonotic-influenza-annual-epidemiological-report-2022
  64. The Food and Agriculture Organization (FAO) of the United Nations
    https://www.fao.org/animal-health/situation-updates/global-aiv-with-zoonotic-potential/en
  65. Emerging Infectious Diseases
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10902543
  66. U.S. Centers for Disease Control and Prevention (CDC)
    https://www.cdc.gov/flu/about/viruses/types.htm
  67. Critical Care
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC6563376
  68. Indian Journal of Pediatrics
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7091034
  69. Virology Journal
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC5785881
  70. efsa.europa.eu
    https://www.efsa.europa.eu/en/news/vaccination-poultry-against-highly-pathogenic-avian-influenza-available-vaccines-and
  71. U.S. Centers for Disease Control and Prevention (CDC)
    https://www.cdc.gov/bird-flu/php/severe-potential/candidate-vaccine-virus.html
  72. U.S. Centers for Disease Control and Prevention (CDC)
    https://www.cdc.gov/flu/swineflu/people-raise-pigs-flu.htm
  73. U.S. Centers for Disease Control and Prevention (CDC)
    https://t.cdc.gov/2S4E
  74. U.S. Centers for Disease Control and Prevention (CDC)
    https://www.cdc.gov/flu/symptoms/index.html
  75. U.S. Centers for Disease Control and Prevention
    https://www.cdc.gov/flu/symptoms/symptoms.htm
  76. JAMA
    https://doi.org/10.1001%2Fjama.293.8.987
  77. U.S. Centers for Disease Control and Prevention (CDC)
    https://www.cdc.gov/flu/symptoms/coldflu.htm
  78. National Health Service UK
    https://www.nhs.uk/conditions/flu/
  79. Department for Environment, Food & Rural Affairs and Animal and Plant Health Agency
    https://www.gov.uk/guidance/avian-influenza-bird-flu
  80. The Royal Society for the Protection of Birds (RSPB)
    https://rspb.org.uk/birds-and-wildlife/avian-influenza-updates
  81. Revue Scientifique et Technique
    https://doi.org/10.20506%2Frst.28.1.1856
  82. U.S. Centers for Disease Control and Prevention (CDC)
    https://www.cdc.gov/flu/avianflu/avian-in-birds.htm
  83. United States Department of Agriculture
    https://www.aphis.usda.gov/media/document/1295/file
  84. European Centre for Disease Prevention and Control
    https://www.ecdc.europa.eu/en/swine-influenza/factsheet
  85. U.S. Centers for Disease Control and Prevention (CDC)
    https://www.cdc.gov/flu/swineflu/keyfacts_pigs.htm
  86. World Health Organization
    https://www.who.int/news/item/30-03-2024-2023--outbreaks-of-swine-influenza
  87. WOAH – World Organisation for Animal Health
    https://www.woah.org/en/disease/equine-influenza-2/
  88. www.merckvetmanual.com
    https://web.archive.org/web/20161115191119/http://www.merckvetmanual.com/mvm/respiratory_system/respiratory_diseases_of_horses/equine_influenza.html
  89. U.S. Centers for Disease Control and Prevention (CDC)
    https://www.cdc.gov/flu/other/horse-flu-faq.htm
  90. U.S. Centers for Disease Control and Prevention (CDC)
    https://www.cdc.gov/flu/other/canine-flu/keyfacts.html
  91. Cold Spring Harbor Perspectives in Medicine
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7778219
  92. cdc.gov
    https://www.cdc.gov/flu-in-animals/about/bat-flu.html
  93. uniklinik-freiburg.de
    https://www.uniklinik-freiburg.de/virologie-en/research/research-teams/martin-schwemmle-team/bat-influenza-viruses.html
  94. Nature
    https://www.nature.com/articles/503169e
  95. PLOS Pathogens
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7161946
  96. Nature Microbiology
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC7758811
  97. "Influenza Basic Research"
    https://www.niaid.nih.gov/diseases-conditions/influenza-basic-research
  98. Journal of Applied Microbiology
    https://doi.org/10.1046%2Fj.1365-2672.2001.01492.x
  99. mBio
    https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3448162
  100. World Health Organization
    https://www.who.int/initiatives/public-health-research-agenda-for-influenza
Image
Source:
Tip: Wheel or +/− to zoom, drag to pan, Esc to close.